Detection of Tumor Slice in Brain Magnetic Resonance Images by Feature Optimized Transfer Learning

Ömer KASIM; Salih ÇELİK

doi:10.29002/asujse.820599

Aksaray University Journal of Science and Engineering

Araştırma Makalesi

Yıl 2020, Cilt 4, Sayı 2, 187 - 198, 30.12.2020

Ömer KASIM Salih ÇELİK

https://doi.org/10.29002/asujse.820599

Öz

Kaynakça

[1] G.S. Tandel, M. Biswas, O.G. Kakde, A. Tiwari, H.S. Suri, M. Turk, B.K. Madhusudhan, A review on a deep learning perspective in brain cancer classification, Cancers, 11:1 (2019) 111.
[2] H. Mohsen, E.S.A. El-Dahshan, E.S.M. El-Horbaty, A.B.M. Salem, Classification using deep learning neural networks for brain tumors, Future Computing and Informatics Journal, 3:1 (2018) 68-71.
[3] Y. Yang, L.F. Yan, X. Zhang, Y. Han, H.Y. Nan, Y.C. Hu, X.W. Ge, Glioma grading on conventional MR images: a deep learning study with transfer learning, Frontiers in neuroscience, 12 (2018) 804.
[4] T. Kaur, T.K. Gandhi, Deep convolutional neural networks with transfer learning for automated brain image classification, Machine Vision and Applications, 31 (2020) 1-16.
[5] G.B. Praveen, A. Agrawal, Multi stage classification and segmentation of brain tumor, 3rd International Conference on Computing for Sustainable Global Development (2016).
[6] M. Havaei, A. Davy, W.D. Farley, A. Biard, A. Courville, Y. Bengio, C. Pal, P.M. Jadoin, H. Larochelle, Brain tumor segmentation with deep neural networks, Medical Image Analysis, (2016).
[7] K. Dimililer, A. Ilhan, Effect of Image Enhancement on MRI Brain Images with Neural Networks, Procedia Computer Science, 102 (2016) 39–44.
[8] S. Kazdal, B. Doğan, A.Y. Çamurcu, Computer-aided detection of brain tumors using image processing techniques 23nd Signal Processing and Communications Applications Conference, (2015) 863-866.
[9] M. Nazir, F. Wahid, S.A. Khan, A simple and intelligent approach for brain MRI classification, Journal of Intelligent & Fuzzy Systems, 28:3 (2015) 1127-1135.
[10] A.M. Dawud, K. Yurtkan, H. Oztoprak, Application of Deep Learning in Neuroradiology: Brain Haemorrhage Classification Using Transfer Learning, Computational Intelligence and Neuroscience, (2019).
[11] N.B. Bahadure, A.K. Ray, H.P. Thethi, Comparative approach of MRI-based brain tumor segmentation and classification using genetic algorithm. Journal of digital imaging, 31:4 (2018) 477-489.
[12] M. Sajjada, S. Khanb, K. Muhammad, W. Wuc, A. Ullah, S.W. Baik, Multi-grade brain tumor classification using deep CNN with extensive data augmentation, Journal of Computational Science, 30 (2019) 174-182.
[13] M.N. Tajik, A. Rehman, W. Khan, B. Khan, Texture feature selection using GA for classification of human brain MRI scans, In International Conference on Swarm Intelligence, (2016) 233-244).
[14] M. Toğaçar, Z. Cömert, B. Ergen, Classification of brain MRI using hyper column technique with convolutional neural network and feature selection method, Expert Systems with Applications, 149 (2020) 113274.
[15] A. Ari, D. Hanbay, Deep learning based brain tumor classification and detection system, Turkish Journal of Electrical Engineering & Computer Sciences, 26:5 (2018) 2275-2286.
[16] Rembrandt The Cancer Imaging Archive, http://doi.org/10.7937/K9/TCIA.2015.588OZUZB
[17] D. Barboriak, Data from RIDER_NEURO_MRI, The Cancer ImagingArchive, (2015). http://doi.org/10.7937/K9/TCIA.2015.VOSN3HN1
[18] K.M. Schmainda, M. Prah, Data from Brain-Tumor-Progression The Cancer Imaging Archive, (2018) http://doi.org/10.7937/K9/TCIA.2018.15quzvnb
[19] K. Clark, B. Vendt, K. Smith, J. Freymann, J. Kirby, P. Koppel, S.Moore, S. Phillips, D. Maffitt, M. Pringle, L. Tarbox, F. Prior, The cancer imaging archive (TCIA): Maintaining and operating a public information repository, Journal of digital imaging, 26:6 (2013) 1045–1057.
[20] A. Krizhevsky, I. Sutskever, G.E. Hinton, ImageNet classification with deep convolutional neural networks. Communications of the ACM 60:6 (2017) 84-90.
[21] I. Kononenko, Estimating attributes: analysis and extensions of RELIEF. In European conference on machine learning, (1994) 171-182.
[22] L. Jin, Q. Zeng, J. He, Y. Feng, S. Zhou, Y. Wu, A ReliefF-SVM-based method for marking dopamine-based disease characteristics: A study on SWEDD and Parkinson’s disease, Behavioural brain research, 356 (2019) 400-407.
[23] P. Kaur, G. Singh, P. Kaur, Classification and Validation of MRI Brain Tumor Using Optimised Machine Learning Approach, International Conference on Data Science, Machine Learning & Applications, (2020) 172-189.
[24] A. Ari, N. Alpaslan, D. Hanbay, Computer-aided tumor detection system using brain MR images, Medical Technologies National Conference, (2015) 1-4.
[25] M. Ghasemi, M. Kelarestaghi, F. Eshghi, A. Sharifi, AFDL: a new adaptive fuzzy dictionary learning for medical image classification, Pattern Analysis and Applications, (2020) 1-20.
[26] J. Amin, M. Sharif, M. Yasmin, S.L. Fernandes, A distinctive approach in brain tumor detection and classification using MRI, Pattern Recognition Letters , (2017)
[27] B. Doğan, S.K. Çalık, Ö. Demir, Beyin Tümörlerinin Biçimsel Yapılandırma Kullanılarak Bilgisayar Destekli Tespiti, Uludağ University Journal of The Faculty of Engineering, 21:2 (2016) 257-268.

Detection of Tumor Slice in Brain Magnetic Resonance Images by Feature Optimized Transfer Learning

Yıl 2020, Cilt 4, Sayı 2, 187 - 198, 30.12.2020

Ömer KASIM Salih ÇELİK

https://doi.org/10.29002/asujse.820599

Öz

This study includes investigating the presence of tumor regions in Magnetic Resonance Imaging (MRI) slices. Since the MRI taken from a patient consists of many slices, it may take time for experts to review these images. The aim of the study is to evaluate the specialist's MRI slices more quickly. The image of each MRI slice taken from the patient was applied to the Alexnet transfer learning algorithm and the properties of the image were obtained. These features are optimized with the Relieff feature selection algorithm to achieve optimum success. The highest accuracy has been achieved with the support vector machine classifier, in which optimized features are used. The study was validated with 3 different combinations by training with two datasets and testing with the other. Thus, a method that can work under different conditions were obtained. The performance metrics of the study were obtained by taking the average of the successes obtained from each data set. MRIs were trained with Alexnet transfer learning model and performance analysis was performed on the obtained classification models. The feature optimization used both increased the success to 97.55% and reduced the processing time from 0.4064 to 0.3045 seconds. The proposed model with a high success rate and a rapid classification is expected to assist the expert in both diagnosis and treatment planning.

Anahtar Kelimeler

Brain Magnetic Resonance Imaging, Feature Extraction with Alexnet Transfer Learning, Relieff Feature Selection, Support Vector Machines

Kaynakça

[1] G.S. Tandel, M. Biswas, O.G. Kakde, A. Tiwari, H.S. Suri, M. Turk, B.K. Madhusudhan, A review on a deep learning perspective in brain cancer classification, Cancers, 11:1 (2019) 111.
[2] H. Mohsen, E.S.A. El-Dahshan, E.S.M. El-Horbaty, A.B.M. Salem, Classification using deep learning neural networks for brain tumors, Future Computing and Informatics Journal, 3:1 (2018) 68-71.
[3] Y. Yang, L.F. Yan, X. Zhang, Y. Han, H.Y. Nan, Y.C. Hu, X.W. Ge, Glioma grading on conventional MR images: a deep learning study with transfer learning, Frontiers in neuroscience, 12 (2018) 804.
[4] T. Kaur, T.K. Gandhi, Deep convolutional neural networks with transfer learning for automated brain image classification, Machine Vision and Applications, 31 (2020) 1-16.
[5] G.B. Praveen, A. Agrawal, Multi stage classification and segmentation of brain tumor, 3rd International Conference on Computing for Sustainable Global Development (2016).
[6] M. Havaei, A. Davy, W.D. Farley, A. Biard, A. Courville, Y. Bengio, C. Pal, P.M. Jadoin, H. Larochelle, Brain tumor segmentation with deep neural networks, Medical Image Analysis, (2016).
[7] K. Dimililer, A. Ilhan, Effect of Image Enhancement on MRI Brain Images with Neural Networks, Procedia Computer Science, 102 (2016) 39–44.
[8] S. Kazdal, B. Doğan, A.Y. Çamurcu, Computer-aided detection of brain tumors using image processing techniques 23nd Signal Processing and Communications Applications Conference, (2015) 863-866.
[9] M. Nazir, F. Wahid, S.A. Khan, A simple and intelligent approach for brain MRI classification, Journal of Intelligent & Fuzzy Systems, 28:3 (2015) 1127-1135.
[10] A.M. Dawud, K. Yurtkan, H. Oztoprak, Application of Deep Learning in Neuroradiology: Brain Haemorrhage Classification Using Transfer Learning, Computational Intelligence and Neuroscience, (2019).
[11] N.B. Bahadure, A.K. Ray, H.P. Thethi, Comparative approach of MRI-based brain tumor segmentation and classification using genetic algorithm. Journal of digital imaging, 31:4 (2018) 477-489.
[12] M. Sajjada, S. Khanb, K. Muhammad, W. Wuc, A. Ullah, S.W. Baik, Multi-grade brain tumor classification using deep CNN with extensive data augmentation, Journal of Computational Science, 30 (2019) 174-182.
[13] M.N. Tajik, A. Rehman, W. Khan, B. Khan, Texture feature selection using GA for classification of human brain MRI scans, In International Conference on Swarm Intelligence, (2016) 233-244).
[14] M. Toğaçar, Z. Cömert, B. Ergen, Classification of brain MRI using hyper column technique with convolutional neural network and feature selection method, Expert Systems with Applications, 149 (2020) 113274.
[15] A. Ari, D. Hanbay, Deep learning based brain tumor classification and detection system, Turkish Journal of Electrical Engineering & Computer Sciences, 26:5 (2018) 2275-2286.
[16] Rembrandt The Cancer Imaging Archive, http://doi.org/10.7937/K9/TCIA.2015.588OZUZB
[17] D. Barboriak, Data from RIDER_NEURO_MRI, The Cancer ImagingArchive, (2015). http://doi.org/10.7937/K9/TCIA.2015.VOSN3HN1
[18] K.M. Schmainda, M. Prah, Data from Brain-Tumor-Progression The Cancer Imaging Archive, (2018) http://doi.org/10.7937/K9/TCIA.2018.15quzvnb
[19] K. Clark, B. Vendt, K. Smith, J. Freymann, J. Kirby, P. Koppel, S.Moore, S. Phillips, D. Maffitt, M. Pringle, L. Tarbox, F. Prior, The cancer imaging archive (TCIA): Maintaining and operating a public information repository, Journal of digital imaging, 26:6 (2013) 1045–1057.
[20] A. Krizhevsky, I. Sutskever, G.E. Hinton, ImageNet classification with deep convolutional neural networks. Communications of the ACM 60:6 (2017) 84-90.
[21] I. Kononenko, Estimating attributes: analysis and extensions of RELIEF. In European conference on machine learning, (1994) 171-182.
[22] L. Jin, Q. Zeng, J. He, Y. Feng, S. Zhou, Y. Wu, A ReliefF-SVM-based method for marking dopamine-based disease characteristics: A study on SWEDD and Parkinson’s disease, Behavioural brain research, 356 (2019) 400-407.
[23] P. Kaur, G. Singh, P. Kaur, Classification and Validation of MRI Brain Tumor Using Optimised Machine Learning Approach, International Conference on Data Science, Machine Learning & Applications, (2020) 172-189.
[24] A. Ari, N. Alpaslan, D. Hanbay, Computer-aided tumor detection system using brain MR images, Medical Technologies National Conference, (2015) 1-4.
[25] M. Ghasemi, M. Kelarestaghi, F. Eshghi, A. Sharifi, AFDL: a new adaptive fuzzy dictionary learning for medical image classification, Pattern Analysis and Applications, (2020) 1-20.
[26] J. Amin, M. Sharif, M. Yasmin, S.L. Fernandes, A distinctive approach in brain tumor detection and classification using MRI, Pattern Recognition Letters , (2017)
[27] B. Doğan, S.K. Çalık, Ö. Demir, Beyin Tümörlerinin Biçimsel Yapılandırma Kullanılarak Bilgisayar Destekli Tespiti, Uludağ University Journal of The Faculty of Engineering, 21:2 (2016) 257-268.

Ayrıntılar

Birincil Dil	İngilizce
Konular	Mühendislik
Yayınlanma Tarihi	December 2020
Bölüm	Research Article
Yazarlar	Ömer KASIM (Sorumlu Yazar) DUMLUPINAR ÜNİVERSİTESİ, SİMAV TEKNOLOJİ FAKÜLTESİ 0000-0003-4021-5412 Türkiye Salih ÇELİK Bu kişi benim DUMLUPINAR ÜNİVERSİTESİ, SİMAV TEKNOLOJİ FAKÜLTESİ Türkiye
Yayımlanma Tarihi	30 Aralık 2020
Başvuru Tarihi	3 Kasım 2020
Kabul Tarihi	29 Aralık 2020
Yayınlandığı Sayı	Yıl 2020, Cilt 4, Sayı 2

Kaynak Göster

Bibtex	@araştırma makalesi { asujse820599, journal = {Aksaray University Journal of Science and Engineering}, issn = {}, eissn = {2587-1277}, address = {Aksaray Üniversitesi, Fen Bilimleri Enstitüsü, Merkez Kampüs, 68100 Aksaray}, publisher = {Aksaray Üniversitesi}, year = {2020}, volume = {4}, pages = {187 - 198}, doi = {10.29002/asujse.820599}, title = {Detection of Tumor Slice in Brain Magnetic Resonance Images by Feature Optimized Transfer Learning}, key = {cite}, author = {Çelik, Salih} }
APA	Kasım, Ö. & Çelik, S. (2020). Detection of Tumor Slice in Brain Magnetic Resonance Images by Feature Optimized Transfer Learning . Aksaray University Journal of Science and Engineering , 4 (2) , 187-198 . DOI: 10.29002/asujse.820599
MLA	Kasım, Ö. , Çelik, S. "Detection of Tumor Slice in Brain Magnetic Resonance Images by Feature Optimized Transfer Learning" . Aksaray University Journal of Science and Engineering 4 (2020 ): 187-198 <http://asujse.aksaray.edu.tr/tr/pub/issue/58393/820599>
Chicago	Kasım, Ö. , Çelik, S. "Detection of Tumor Slice in Brain Magnetic Resonance Images by Feature Optimized Transfer Learning". Aksaray University Journal of Science and Engineering 4 (2020 ): 187-198
RIS	TY - JOUR T1 - Detection of Tumor Slice in Brain Magnetic Resonance Images by Feature Optimized Transfer Learning AU - Ömer Kasım , Salih Çelik Y1 - 2020 PY - 2020 N1 - doi: 10.29002/asujse.820599 DO - 10.29002/asujse.820599 T2 - Aksaray University Journal of Science and Engineering JF - Journal JO - JOR SP - 187 EP - 198 VL - 4 IS - 2 SN - -2587-1277 M3 - doi: 10.29002/asujse.820599 UR - https://doi.org/10.29002/asujse.820599 Y2 - 2020 ER -
EndNote	%0 Aksaray University Journal of Science and Engineering Detection of Tumor Slice in Brain Magnetic Resonance Images by Feature Optimized Transfer Learning %A Ömer Kasım , Salih Çelik %T Detection of Tumor Slice in Brain Magnetic Resonance Images by Feature Optimized Transfer Learning %D 2020 %J Aksaray University Journal of Science and Engineering %P -2587-1277 %V 4 %N 2 %R doi: 10.29002/asujse.820599 %U 10.29002/asujse.820599
ISNAD	Kasım, Ömer , Çelik, Salih . "Detection of Tumor Slice in Brain Magnetic Resonance Images by Feature Optimized Transfer Learning". Aksaray University Journal of Science and Engineering 4 / 2 (Aralık 2020): 187-198 . https://doi.org/10.29002/asujse.820599
AMA	Kasım Ö. , Çelik S. Detection of Tumor Slice in Brain Magnetic Resonance Images by Feature Optimized Transfer Learning. Aksaray J. Sci. Eng.. 2020; 4(2): 187-198.
Vancouver	Kasım Ö. , Çelik S. Detection of Tumor Slice in Brain Magnetic Resonance Images by Feature Optimized Transfer Learning. Aksaray University Journal of Science and Engineering. 2020; 4(2): 187-198.
IEEE	Ö. Kasım ve S. Çelik , "Detection of Tumor Slice in Brain Magnetic Resonance Images by Feature Optimized Transfer Learning", Aksaray University Journal of Science and Engineering, c. 4, sayı. 2, ss. 187-198, Ara. 2020, doi:10.29002/asujse.820599

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